home / evo2 / variants

variants: 1258226

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
1258226 12:1818310:T:C rs369403692 12 1818310 T C 0.0854262 0.0224566 0.064867 0.130548 0.00135135 0.112341 0.12585 0.127869 0.0661826 Intronic SVA_D Retroposon SVA intronic CACNA2D4           -28004.94921875 -28013.95703125 -9.0078125 -27994.4501953125 -28000.7646484375 -6.314453125 -26344.8386712888 -26352.9225804308 -8.08390914202391 -15371.2109375 -13106.73046875 2264.48046875 -15615.7470703125 -13212.8232421875 2402.923828125 -14722.6091668881 -12485.5727942096 2237.03637267851 Q2_20-40% AF_0-0.2     0
Powered by Datasette · Queries took 0.676ms · Data license: Apache License 2.0