home / evo2 / variants

variants: 311327

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
311327 1:245821634:T:C rs12037366 1 245821634 T C 0.0958081 0.0631445 0.156765 0.0886503 0.208938 0.125483 0.0486111 0.087886 0.150993 Intronic L1PA3 LINE L1 intronic SMYD3       0.053 -0.896 -33255.19140625 -33332.78515625 -77.59375 -33645.671875 -33688.73828125 -43.06640625 -32795.9989819128 -32855.2573493778 -59.2583674649795 -16370.37890625 -16163.91015625 206.46875 -19010.85546875 -16495.19921875 2515.65625 -17434.7738459073 -16097.6887369466 1337.08510896073 Q1_0-20% AF_0-0.2     0
Powered by Datasette · Queries took 0.745ms · Data license: Apache License 2.0