home / evo2 / variants

variants: 3265167

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
3265167 2:64843302:T:C rs187534299 2 64843302 T C 0.0645918 0.035312 0.0461933 0.0540984 0.00210576 0.0295784 0.075 0.0867048 0.0371236 Intronic       ncRNA_intronic ENSG00000287123       0.0125 0.2045 -30206.564453125 -30213.41015625 -6.845703125 -30303.2766113281 -30306.8303222656 -3.5537109375 -31008.398624361 -31013.9581824604 -5.55955809936131 -15127.5751953125 -13531.3212890625 1596.25390625 -17299.3525390625 -14536.5480957031 2762.80444335938 -17142.576869978 -14745.6602617715 2396.91660820645 Q1_0-20% AF_0-0.2     0
Powered by Datasette · Queries took 0.805ms · Data license: Apache License 2.0