home / evo2 / variants

variants: 3265168

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
3265168 2:64843307:T:C rs116224672 2 64843307 T C 0.543423 0.236679 0.600061 0.717809 0.655235 0.642086 0.576923 0.661973 0.700668 Intronic       ncRNA_intronic ENSG00000287123       0.018 0.563 -30207.123046875 -30217.453125 -10.330078125 -30306.2202148438 -30314.2338867188 -8.013671875 -30875.2274120459 -30883.4218124687 -8.19440042286806 -15757.5849609375 -13718.6298828125 2038.955078125 -17438.736328125 -14590.8500976562 2847.88623046875 -17326.8618513358 -14727.7876408908 2599.07421044507 Q4_60-80% AF_0.6-0.8     0
Powered by Datasette · Queries took 0.737ms · Data license: Apache License 2.0