home / evo2 / variants

variants: 3740161

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
3740161 3:126383224:G:GT rs201968520 3 126383224 G GT 0.737222 0.81174 0.705805 0.703458 0.524225 0.727143 0.732877 0.721045 0.710581 Intergenic L1PA6 LINE L1 intergenic KLF15;CFAP100-DT dist=25816;dist=9811     0.008 0.171 -32287.47265625 -32332.94140625 -45.46875 -32118.365234375 -32218.775390625 -100.41015625 -34418.4699874351 -34501.8473442383 -83.3773568031611 -20887.6508789062 -16484.1489257812 4403.501953125 -18280.1882324219 -15958.7502441406 2321.43798828125 -20671.226331916 -17257.9643391113 3413.26199280463 Q4_60-80% AF_0.6-0.8     0
Powered by Datasette · Queries took 0.604ms · Data license: Apache License 2.0