home / evo2 / variants

variants: 5684364

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
5684364 7:40391533:A:C rs79486579 7 40391533 A C 0.110079 0.0648126 0.0981968 0.100634 0.478657 0.152925 0.0680272 0.103211 0.167082 Intronic L1PA5 LINE L1 intronic SUGCT       0.152 0.1555 -31315.6640625 -31367.953125 -52.2890625 -31588.08984375 -31619.353515625 -31.263671875 -29006.1918693722 -29044.4329703915 -38.2411010192263 -15524.70703125 -15345.47265625 179.234375 -17953.4833984375 -15759.0087890625 2194.474609375 -15660.1232334917 -14542.2184353896 1117.90479810218 Q2_20-40% AF_0-0.2     0
Powered by Datasette · Queries took 0.726ms · Data license: Apache License 2.0