home / evo2 / variants

variants: 5833615

One row per variant. Variant_ID = Chromosome:Position:Ref:Alt (GRCh38). Allele frequencies are gnomAD v4.1 joint (joint + 8 ancestries). Free-text search box covers rsID, gene symbol and amino-acid change.

Data license: Apache License 2.0

This data as json

rowid Variant_ID RSID Chromosome Position Reference_Allele Alternate_Allele Joint_AF African_AF Admixed_American_AF Ashkenazi_Jewish_AF East_Asian_AF Finnish_AF Middle_Eastern_AF Non_Finnish_European_AF South_Asian_AF ENCODE_cCRE_Annotation Repeat_Name Repeat_Class Repeat_Family Functional_Annotation Gene Gene_Detail Exonic_Function Amino_Acid_Change PhastCons_100way PhyloP_100way Evo2_7B_NoRC_Ref Evo2_7B_NoRC_Alt Evo2_7B_NoRC_Delta Evo2_7B_AvgRC_Ref Evo2_7B_AvgRC_Alt Evo2_7B_AvgRC_Delta Evo2_7B_WeightedRC_Ref Evo2_7B_WeightedRC_Alt Evo2_7B_WeightedRC_Delta Evo2_40B_NoRC_Ref Evo2_40B_NoRC_Alt Evo2_40B_NoRC_Delta Evo2_40B_AvgRC_Ref Evo2_40B_AvgRC_Alt Evo2_40B_AvgRC_Delta Evo2_40B_WeightedRC_Ref Evo2_40B_WeightedRC_Alt Evo2_40B_WeightedRC_Delta MAF_tier AF_bin SCREEN_V4_Classes SCREEN_V4_Accessions SCREEN_V4_Overlap_Count
5833615 7:9746964:G:A rs10252969 7 9746964 G A 0.4667 0.685952 0.490478 0.322748 0.608662 0.364259 0.373288 0.345148 0.484005 Intronic L1PA5 LINE L1 ncRNA_intronic ENSG00000234710       0.062 -0.808 -30547.296875 -30559.37109375 -12.07421875 -30607.0029296875 -30617.88671875 -10.8837890625 -32165.7413296492 -32177.4728594766 -11.731529827397 -16514.5234375 -14471.40234375 2043.12109375 -16308.3828125 -14124.91015625 2183.47265625 -17072.1674020604 -14883.8897661722 2188.27763588823 Q4_60-80% AF_0.2-0.4     0
Powered by Datasette · Queries took 0.669ms · Data license: Apache License 2.0