Evo2 Variant Effect Database

Database & SQL — inspect the same scored variants and original fields used throughout Evo2VED.

Look up a variant by rsID

Exact dbSNP rsID, e.g. rs429358

Custom SQL query returning 1 row (hide) 

SELECT Variant_ID, RSID, Chromosome, Position, Reference_Allele, Alternate_Allele,
       Joint_AF, Non_Finnish_European_AF,
       Evo2_7B_AvgRC_Delta, Evo2_40B_AvgRC_Delta,
       Functional_Annotation, Gene, Exonic_Function, Amino_Acid_Change,
       ENCODE_cCRE_Annotation, PhastCons_100way, PhyloP_100way
FROM variants
WHERE RSID = :rsid

Query parameters

Edit SQL

This data as json, CSV

Variant_IDRSIDChromosomePositionReference_AlleleAlternate_AlleleJoint_AFNon_Finnish_European_AFEvo2_7B_AvgRC_DeltaEvo2_40B_AvgRC_DeltaFunctional_AnnotationGeneExonic_FunctionAmino_Acid_ChangeENCODE_cCRE_AnnotationPhastCons_100wayPhyloP_100way
19:44908684:T:C rs429358 19 44908684 T C 0.14852 0.15063 9.21533012390137 15.9466071128845 exonic APOE nonsynonymous SNV APOE:ENST00000252486.9:exon4:c.T388C:p.C130R Coding 0.904 2.086